SqMassFile Class Reference

An class that uses on-disk SQLite database to read and write spectra and chromatograms. More...

#include <OpenMS/FORMAT/SqMassFile.h>

Collaboration diagram for SqMassFile:

Classes
struct	SqMassConfig
	Configuration class for SqMassFile. More...

Public Types
typedef MSExperiment	MapType

Public Member Functions
Constructors and Destructor
	SqMassFile ()
	Default constructor. More...
	~SqMassFile ()
	Default destructor. More...

Read / Write a complete mass spectrometric experiment
SqMassConfig	config_
void	load (const String &filename, MapType &map)
void	store (const String &filename, MapType &map)
void	transform (const String &filename_in, Interfaces::IMSDataConsumer *consumer, bool skip_full_count=false, bool skip_first_pass=false)
void	setConfig (SqMassConfig config)

Detailed Description

An class that uses on-disk SQLite database to read and write spectra and chromatograms.

This class provides functions to read and write spectra and chromatograms to disk using a SQLite database and store them in sqMass format. This allows users to access, select and filter spectra and chromatograms on-demand even in a large collection of data.

Member Typedef Documentation

MapType

typedef MSExperiment MapType

Constructor & Destructor Documentation

SqMassFile()

SqMassFile

(

)

Default constructor.

~SqMassFile()

~SqMassFile

(

)

Default destructor.

Member Function Documentation

load()

void load	(	const String &	filename,
		MapType &	map
	)

setConfig()

void setConfig ( SqMassConfig  config )

inline

store()

void store	(	const String &	filename,
		MapType &	map
	)

transform()

void transform	(	const String &	filename_in,
		Interfaces::IMSDataConsumer *	consumer,
		bool	skip_full_count = false,
		bool	skip_first_pass = false
	)

Member Data Documentation

config_

SqMassConfig config_

protected