LCElutionPeak Class Reference

#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/LCElutionPeak.h>

Collaboration diagram for LCElutionPeak:

Public Member Functions
	~LCElutionPeak ()
	LCElutionPeak ()
	LCElutionPeak (MZ_series_ITERATOR, double)
	LCElutionPeak (const LCElutionPeak &)
	LCElutionPeak (const LCElutionPeak *)
void	analyzeLCElutionPeak ()
void	setSNIntensityThreshold ()
void	computeLCElutionPeakParameters ()
double	compute_delta_area (double, double, double, double)
void	remove_background_peak ()
void	compute_CHRG ()
void	defineLCElutionPeakParametersFromMSPeak ()
void	createConsensIsotopPattern ()
void	print_profile (std::ofstream *)
MSPeak *	find_true_peak (float)
void	show_info ()
LCElutionPeak &	operator= (const LCElutionPeak &)
LCElutionPeak &	operator<= (const LCElutionPeak &)
LCElutionPeak &	operator>= (const LCElutionPeak &)
LCElutionPeak &	operator< (const LCElutionPeak &)
LCElutionPeak &	operator> (const LCElutionPeak &)
void	setElutionPeakExtraInfo (std::string in)
std::string	getElutionPeakExtraInfo ()
SIGNAL_iterator	get_signal_list_start ()
SIGNAL_iterator	get_signal_list_end ()
void	set_apex_retention_time (double in)
void	update_CHRGMAP (MSPeak *in)
int	get_scan_apex ()
double	get_apex_intensity ()
double	get_apex_retention_time ()
double	get_apex_MZ ()
float	get_intensity (int in)
double	get_MZ (int)
double	get_total_peak_area ()
int	get_start_scan ()
int	get_end_scan ()
void	set_start_retention_time (double in)
double	get_start_retention_time ()
void	set_end_retention_time (double in)
double	get_end_retention_time ()
int	get_nb_ms_peaks ()
int	get_charge_state ()
double	getSignalToNoise ()
double	getSignalToNoiseBackground ()

Static Public Attributes
static double	DEBUG_MASS_START
static double	DEBUG_MASS_END

Protected Attributes
double	fMonoMass
double	fVolume
int	fCharge
int	fScanNumberStart
int	fScanNumberApex
int	fScanNumberEnd
double	fapex_intensity
double	fRT
double	fStartTR
double	fEndTR
double	fpeak_area
double	fSignalToNoise
double	fSNIntensityThreshold
MSPeak *	APEX
std::string	elutionPeakExtraInfo
std::multimap< int, MSPeak >	intens_signals
std::multimap< int, int >	CHRG_MAP

Private Attributes
ConsensusIsotopePattern *	isotopePattern
int	fNrIsotopes
double	f_observed_Mass
double	fIsotopMass

Constructor & Destructor Documentation

~LCElutionPeak()

~LCElutionPeak

(

)

LCElutionPeak() [1/4]

LCElutionPeak

(

)

LCElutionPeak() [2/4]

LCElutionPeak	(	MZ_series_ITERATOR	,
		double
	)

LCElutionPeak() [3/4]

LCElutionPeak

(

const LCElutionPeak &

)

LCElutionPeak() [4/4]

LCElutionPeak

(

const LCElutionPeak *

)

Member Function Documentation

analyzeLCElutionPeak()

void analyzeLCElutionPeak

(

)

compute_CHRG()

void compute_CHRG

(

)

compute_delta_area()

double compute_delta_area	(	double	,
		double	,
		double	,
		double
	)

computeLCElutionPeakParameters()

void computeLCElutionPeakParameters

(

)

createConsensIsotopPattern()

void createConsensIsotopPattern

(

)

defineLCElutionPeakParametersFromMSPeak()

void defineLCElutionPeakParametersFromMSPeak

(

)

find_true_peak()

MSPeak* find_true_peak

(

float

)

get_apex_intensity()

double get_apex_intensity

(

)

get_apex_MZ()

double get_apex_MZ

(

)

get_apex_retention_time()

double get_apex_retention_time

(

)

get_charge_state()

int get_charge_state

(

)

get_end_retention_time()

double get_end_retention_time

(

)

get_end_scan()

int get_end_scan

(

)

get_intensity()

float get_intensity

(

int

in

)

get_MZ()

double get_MZ

(

int

)

get_nb_ms_peaks()

int get_nb_ms_peaks

(

)

get_scan_apex()

int get_scan_apex

(

)

get_signal_list_end()

SIGNAL_iterator get_signal_list_end

(

)

get_signal_list_start()

SIGNAL_iterator get_signal_list_start

(

)

get_start_retention_time()

double get_start_retention_time

(

)

get_start_scan()

int get_start_scan

(

)

get_total_peak_area()

double get_total_peak_area

(

)

getElutionPeakExtraInfo()

std::string getElutionPeakExtraInfo

(

)

getSignalToNoise()

double getSignalToNoise

(

)

getSignalToNoiseBackground()

double getSignalToNoiseBackground

(

)

operator<()

LCElutionPeak& operator<

(

const LCElutionPeak &

)

operator<=()

LCElutionPeak& operator<=

(

const LCElutionPeak &

)

operator=()

LCElutionPeak& operator=

(

const LCElutionPeak &

)

operator>()

LCElutionPeak& operator>

(

const LCElutionPeak &

)

operator>=()

LCElutionPeak& operator>=

(

const LCElutionPeak &

)

print_profile()

void print_profile

(

std::ofstream *

)

remove_background_peak()

void remove_background_peak

(

)

set_apex_retention_time()

void set_apex_retention_time

(

double

in

)

set_end_retention_time()

void set_end_retention_time

(

double

in

)

set_start_retention_time()

void set_start_retention_time

(

double

in

)

setElutionPeakExtraInfo()

void setElutionPeakExtraInfo

(

std::string

in

)

setSNIntensityThreshold()

void setSNIntensityThreshold

(

)

show_info()

void show_info

(

)

update_CHRGMAP()

void update_CHRGMAP

(

MSPeak *

in

)

Member Data Documentation

APEX

MSPeak* APEX

protected

CHRG_MAP

std::multimap<int, int> CHRG_MAP

protected

DEBUG_MASS_END

double DEBUG_MASS_END

static

DEBUG_MASS_START

double DEBUG_MASS_START

static

elutionPeakExtraInfo

std::string elutionPeakExtraInfo

protected

f_observed_Mass

double f_observed_Mass

private

fapex_intensity

double fapex_intensity

protected

fCharge

int fCharge

protected

fEndTR

double fEndTR

protected

fIsotopMass

double fIsotopMass

private

fMonoMass

double fMonoMass

protected

fNrIsotopes

int fNrIsotopes

private

fpeak_area

double fpeak_area

protected

fRT

double fRT

protected

fScanNumberApex

int fScanNumberApex

protected

fScanNumberEnd

int fScanNumberEnd

protected

fScanNumberStart

int fScanNumberStart

protected

fSignalToNoise

double fSignalToNoise

protected

fSNIntensityThreshold

double fSNIntensityThreshold

protected

fStartTR

double fStartTR

protected

fVolume

double fVolume

protected

intens_signals

std::multimap<int, MSPeak> intens_signals

protected

isotopePattern

ConsensusIsotopePattern* isotopePattern

private