Instrument Class Reference

Description of a MS instrument. More...

#include <OpenMS/METADATA/Instrument.h>

Inheritance diagram for Instrument:

Collaboration diagram for Instrument:

Public Types
enum	IonOpticsType {   UNKNOWN, MAGNETIC_DEFLECTION, DELAYED_EXTRACTION, COLLISION_QUADRUPOLE,   SELECTED_ION_FLOW_TUBE, TIME_LAG_FOCUSING, REFLECTRON, EINZEL_LENS,   FIRST_STABILITY_REGION, FRINGING_FIELD, KINETIC_ENERGY_ANALYZER, STATIC_FIELD,   SIZE_OF_IONOPTICSTYPE }
	ion optics type More...

Public Member Functions
	Instrument ()
	Constructor. More...
	Instrument (const Instrument &)=default
	Copy constructor. More...
	Instrument (Instrument &&)=default
	Move constructor. More...
	~Instrument ()
	Destructor. More...
Instrument &	operator= (const Instrument &)=default
	Assignment operator. More...
Instrument &	operator= (Instrument &&) &=default
	Move assignment operator. More...
bool	operator== (const Instrument &rhs) const
	Equality operator. More...
bool	operator!= (const Instrument &rhs) const
	Equality operator. More...
const String &	getName () const
	returns the name of the instrument More...
void	setName (const String &name)
	sets the name of the instrument More...
const String &	getVendor () const
	returns the instrument vendor More...
void	setVendor (const String &vendor)
	sets the instrument vendor More...
const String &	getModel () const
	returns the instrument model More...
void	setModel (const String &model)
	sets the instrument model More...
const String &	getCustomizations () const
	returns a description of customizations More...
void	setCustomizations (const String &customizations)
	sets a description of customizations More...
const std::vector< IonSource > &	getIonSources () const
	returns a const reference to the ion source list More...
std::vector< IonSource > &	getIonSources ()
	returns a mutable reference to the ion source list More...
void	setIonSources (const std::vector< IonSource > &ion_sources)
	sets the ion source list More...
const std::vector< MassAnalyzer > &	getMassAnalyzers () const
	returns a const reference to the mass analyzer list More...
std::vector< MassAnalyzer > &	getMassAnalyzers ()
	returns a mutable reference to the mass analyzer list More...
void	setMassAnalyzers (const std::vector< MassAnalyzer > &mass_analyzers)
	sets the mass analyzer list More...
const std::vector< IonDetector > &	getIonDetectors () const
	returns a const reference to the ion detector list More...
std::vector< IonDetector > &	getIonDetectors ()
	returns a mutable reference to the ion detector list More...
void	setIonDetectors (const std::vector< IonDetector > &ion_detectors)
	sets the ion detector list More...
const Software &	getSoftware () const
	returns a const reference to the instrument software More...
Software &	getSoftware ()
	returns a mutable reference to the instrument software More...
void	setSoftware (const Software &software)
	sets the instrument software More...
IonOpticsType	getIonOptics () const
	returns the ion optics type More...
void	setIonOptics (IonOpticsType ion_optics)
	sets the ion optics type More...
Public Member Functions inherited from MetaInfoInterface
	MetaInfoInterface ()
	Constructor. More...
	MetaInfoInterface (const MetaInfoInterface &rhs)
	Copy constructor. More...
	MetaInfoInterface (MetaInfoInterface &&) noexcept
	Move constructor. More...
	~MetaInfoInterface ()
	Destructor. More...
MetaInfoInterface &	operator= (const MetaInfoInterface &rhs)
	Assignment operator. More...
MetaInfoInterface &	operator= (MetaInfoInterface &&) noexcept
	Move assignment operator. More...
bool	operator== (const MetaInfoInterface &rhs) const
	Equality operator. More...
bool	operator!= (const MetaInfoInterface &rhs) const
	Equality operator. More...
const DataValue &	getMetaValue (const String &name, const DataValue &default_value=DataValue::EMPTY) const
	Returns the value corresponding to a string, or a default value (default: DataValue::EMPTY) if not found. More...
const DataValue &	getMetaValue (UInt index, const DataValue &default_value=DataValue::EMPTY) const
	Returns the value corresponding to an index, or a default value (default: DataValue::EMPTY) if not found. More...
bool	metaValueExists (const String &name) const
	Returns whether an entry with the given name exists. More...
bool	metaValueExists (UInt index) const
	Returns whether an entry with the given index exists. More...
void	setMetaValue (const String &name, const DataValue &value)
	Sets the DataValue corresponding to a name. More...
void	setMetaValue (UInt index, const DataValue &value)
	Sets the DataValue corresponding to an index. More...
void	removeMetaValue (const String &name)
	Removes the DataValue corresponding to name if it exists. More...
void	removeMetaValue (UInt index)
	Removes the DataValue corresponding to index if it exists. More...
void	addMetaValues (const MetaInfoInterface &from)
	function to copy all meta values from one object to this one More...
void	getKeys (std::vector< String > &keys) const
	Fills the given vector with a list of all keys for which a value is set. More...
void	getKeys (std::vector< UInt > &keys) const
	Fills the given vector with a list of all keys for which a value is set. More...
bool	isMetaEmpty () const
	Returns if the MetaInfo is empty. More...
void	clearMetaInfo ()
	Removes all meta values. More...

Static Public Attributes
static const std::string	NamesOfIonOpticsType [SIZE_OF_IONOPTICSTYPE]
	Names of inlet types. More...

Protected Attributes
String	name_
String	vendor_
String	model_
String	customizations_
std::vector< IonSource >	ion_sources_
std::vector< MassAnalyzer >	mass_analyzers_
std::vector< IonDetector >	ion_detectors_
Software	software_
IonOpticsType	ion_optics_
Protected Attributes inherited from MetaInfoInterface
MetaInfo *	meta_
	Pointer to the MetaInfo object (0 by default) More...

Additional Inherited Members
Static Public Member Functions inherited from MetaInfoInterface
static MetaInfoRegistry &	metaRegistry ()
	Returns a reference to the MetaInfoRegistry. More...
Protected Member Functions inherited from MetaInfoInterface
void	createIfNotExists_ ()
	Creates the MetaInfo object if it does not exist. More...

Detailed Description

Description of a MS instrument.

It contains information like vendor, model, ion source(s), mass analyzer(s), and ion detector(s).

The parts (IonSource, MassAnalyzer, IonDetector) all have a order member. The order can be ignored, as long the instrument has this default setup:

• one ion source
• one or many mass analyzers
• one ion detector

For more complex instruments, the order should be defined.

Member Enumeration Documentation

IonOpticsType

enum IonOpticsType

ion optics type

Enumerator
UNKNOWN	unknown
MAGNETIC_DEFLECTION	magnetic deflection
DELAYED_EXTRACTION	delayed extraction
COLLISION_QUADRUPOLE	collision quadrupole
SELECTED_ION_FLOW_TUBE	selected ion flow tube
TIME_LAG_FOCUSING	time lag focusing
REFLECTRON	reflectron
EINZEL_LENS	einzel lens
FIRST_STABILITY_REGION	first stability region
FRINGING_FIELD	fringing field
KINETIC_ENERGY_ANALYZER	kinetic energy analyzer
STATIC_FIELD	static field
SIZE_OF_IONOPTICSTYPE

Constructor & Destructor Documentation

Instrument() [1/3]

Instrument

(

)

Constructor.

Instrument() [2/3]

Instrument ( const Instrument &  )

default

Copy constructor.

Instrument() [3/3]

Instrument ( Instrument &&  )

default

Move constructor.

~Instrument()

~Instrument

(

)

Destructor.

Member Function Documentation

getCustomizations()

const String& getCustomizations

(

)

const

returns a description of customizations

getIonDetectors() [1/2]

std::vector<IonDetector>& getIonDetectors

(

)

returns a mutable reference to the ion detector list

getIonDetectors() [2/2]

const std::vector<IonDetector>& getIonDetectors

(

)

const

returns a const reference to the ion detector list

getIonOptics()

IonOpticsType getIonOptics

(

)

const

returns the ion optics type

getIonSources() [1/2]

std::vector<IonSource>& getIonSources

(

)

returns a mutable reference to the ion source list

getIonSources() [2/2]

const std::vector<IonSource>& getIonSources

(

)

const

returns a const reference to the ion source list

Referenced by XMassFile::importExperimentalSettings().

getMassAnalyzers() [1/2]

std::vector<MassAnalyzer>& getMassAnalyzers

(

)

returns a mutable reference to the mass analyzer list

getMassAnalyzers() [2/2]

const std::vector<MassAnalyzer>& getMassAnalyzers

(

)

const

returns a const reference to the mass analyzer list

Referenced by XMassFile::importExperimentalSettings().

getModel()

const String& getModel

(

)

const

returns the instrument model

getName()

const String& getName

(

)

const

returns the name of the instrument

getSoftware() [1/2]

Software& getSoftware

(

)

returns a mutable reference to the instrument software

getSoftware() [2/2]

const Software& getSoftware

(

)

const

returns a const reference to the instrument software

getVendor()

const String& getVendor

(

)

const

returns the instrument vendor

operator!=()

bool operator!=

(

const Instrument &

rhs

)

const

Equality operator.

operator=() [1/2]

Instrument& operator= ( const Instrument &  )

default

Assignment operator.

operator=() [2/2]

Instrument& operator= ( Instrument &&  ) &

default

Move assignment operator.

operator==()

bool operator==

(

const Instrument &

rhs

)

const

Equality operator.

setCustomizations()

void setCustomizations

(

const String &

customizations

)

sets a description of customizations

setIonDetectors()

void setIonDetectors

(

const std::vector< IonDetector > &

ion_detectors

)

sets the ion detector list

setIonOptics()

void setIonOptics

(

IonOpticsType

ion_optics

)

sets the ion optics type

setIonSources()

void setIonSources

(

const std::vector< IonSource > &

ion_sources

)

sets the ion source list

setMassAnalyzers()

void setMassAnalyzers

(

const std::vector< MassAnalyzer > &

mass_analyzers

)

sets the mass analyzer list

setModel()

void setModel

(

const String &

model

)

sets the instrument model

Referenced by XMassFile::importExperimentalSettings().

setName()

void setName

(

const String &

name

)

sets the name of the instrument

Referenced by XMassFile::importExperimentalSettings().

setSoftware()

void setSoftware

(

const Software &

software

)

sets the instrument software

setVendor()

void setVendor

(

const String &

vendor

)

sets the instrument vendor

Referenced by XMassFile::importExperimentalSettings().

Member Data Documentation

customizations_

String customizations_

protected

ion_detectors_

std::vector<IonDetector> ion_detectors_

protected

ion_optics_

IonOpticsType ion_optics_

protected

ion_sources_

std::vector<IonSource> ion_sources_

protected

mass_analyzers_

std::vector<MassAnalyzer> mass_analyzers_

protected

model_

String model_

protected

name_

String name_

protected

NamesOfIonOpticsType

const std::string NamesOfIonOpticsType[SIZE_OF_IONOPTICSTYPE]

static

Names of inlet types.

software_

Software software_

protected

vendor_

String vendor_

protected