ArrowSchemaRegistry.h File Reference

#include <OpenMS/OpenMSConfig.h>
#include <memory>
#include <string>
#include <vector>

Include dependency graph for ArrowSchemaRegistry.h:

Go to the source code of this file.

Classes
struct	ValidationResult
	Result of schema validation containing validity flag and error messages. More...
struct	ProteinSchema
	Schema for protein identification results table. More...
struct	ProteinGroupSchema
	Schema for protein group (indistinguishable group) results table. More...
struct	SearchParamsSchema
	Schema for search engine parameters and settings table. More...
struct	FeatureSchema
	Schema for LC-MS feature table (FeatureMap features) More...
struct	ConsensusFeatureSchema
	Schema for consensus feature table (ConsensusMap features) More...
struct	PSMSchema
	Schema for peptide-spectrum match (PSM) results table. More...
struct	QPXPSMSchema
	Schema for QPX PSM export (quantms Parquet eXchange format, PSM table) More...
struct	QPXFeatureSchema
	Schema for QPX feature view (quantms Parquet eXchange format) More...
struct	SpectraLongSchema
	Schema for spectra in long (one row per peak) format. More...
struct	SpectraSemiWideSchema
	Schema for spectra in semi-wide (one row per spectrum, list columns for peaks) format. More...
struct	ChromatogramSchema
	Schema for chromatograms in long (one row per data point) format. More...
struct	ChromatogramSemiWideSchema
	Schema for chromatograms in semi-wide (one row per chromatogram, list columns) format. More...
struct	OSWPrecursorSchema
	Schema for OpenSWATH precursor (peptide query) table. More...
struct	OSWTransitionSchema
	Schema for OpenSWATH transition (fragment ion) table. More...
struct	OSWFeaturePrecursorSchema
	Schema for OpenSWATH feature-level precursor intensity table. More...
struct	OSWRunSchema
	Schema for OpenSWATH run metadata table. More...
struct	OSWFeatureSchema
	Schema for OpenSWATH feature scoring results table. More...
struct	OSWFeatureTransitionSchema
	Schema for OpenSWATH per-transition feature scoring results table. More...
struct	XICSchema
	Schema for extracted ion chromatogram (XIC) data table. More...
struct	XIMSchema
	Schema for extracted ion mobilogram (XIM) data table. More...

Namespaces
namespace	arrow
namespace	OpenMS
	Main OpenMS namespace.
namespace	OpenMS::ArrowSchemaValidation
	Utilities for validating Arrow table schemas against expected definitions.

Enumerations
enum class	Mode { Strict , Subset }
	Validation strictness: Strict requires exact match, Subset allows missing and extra columns. More...

Functions
ValidationResult	validate (const std::shared_ptr< arrow::Table > &table, const std::shared_ptr< arrow::Schema > &expected_schema, Mode mode=Mode::Strict)
	Validate an Arrow table's schema against an expected schema.