PEFFProcessedRegion Struct Reference

Represents a PEFF processed region (signal peptide, transit peptide, etc.). More...

#include <OpenMS/FORMAT/PEFFFile.h>

Collaboration diagram for PEFFProcessedRegion:

Public Member Functions
	PEFFProcessedRegion ()=default
	PEFFProcessedRegion (Size start, Size end, const std::string &acc, const std::string &n="", const std::string &tag="", UInt aid=std::numeric_limits< UInt >::max())
bool	operator== (const PEFFProcessedRegion &rhs) const

Public Attributes
Size	start_position {0}
	1-based start position
Size	end_position {0}
	1-based end position
std::string	accession
	PEFF CV accession (e.g., "PEFF:0001021")
std::string	name
	Optional name (e.g., "signal peptide")
std::string	optional_tag
	Optional tag (last component of annotation tuple)
UInt	annotation_id {std::numeric_limits<UInt>::max()}
	Optional annotation identifier, max() = not set.

Detailed Description

Represents a PEFF processed region (signal peptide, transit peptide, etc.).

Parsed from \Processed annotations.

Constructor & Destructor Documentation

PEFFProcessedRegion() [1/2]

PEFFProcessedRegion ( )

default

PEFFProcessedRegion() [2/2]

PEFFProcessedRegion ( Size  start, Size  end, const std::string &  acc, const std::string &  n = "", const std::string &  tag = "", UInt  aid = std::numeric_limits<UInt>::max()  )

inline

Member Function Documentation

operator==()

bool operator== ( const PEFFProcessedRegion &  rhs ) const

inline

References PEFFProcessedRegion::accession, PEFFProcessedRegion::annotation_id, PEFFProcessedRegion::end_position, PEFFProcessedRegion::name, PEFFProcessedRegion::optional_tag, and PEFFProcessedRegion::start_position.

Member Data Documentation

accession

std::string accession

PEFF CV accession (e.g., "PEFF:0001021")

Referenced by PEFFProcessedRegion::operator==().

annotation_id

UInt annotation_id {std::numeric_limits<UInt>::max()}

Optional annotation identifier, max() = not set.

Referenced by PEFFProcessedRegion::operator==().

end_position

Size end_position {0}

1-based end position

Referenced by PEFFProcessedRegion::operator==().

name

std::string name

Optional name (e.g., "signal peptide")

Referenced by PEFFProcessedRegion::operator==().

optional_tag

std::string optional_tag

Optional tag (last component of annotation tuple)

Referenced by PEFFProcessedRegion::operator==().

start_position

Size start_position {0}

1-based start position

Referenced by PEFFProcessedRegion::operator==().