Base class for all Caap evaluation algorithms. More...

#include <OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithm.h>

Inheritance diagram for MapAlignmentEvaluationAlgorithm:

Public Member Functions
	MapAlignmentEvaluationAlgorithm ()
	Default constructor. More...

virtual	~MapAlignmentEvaluationAlgorithm ()
	Destructor. More...

virtual void	evaluate (const ConsensusMap &conensus_map_in, const ConsensusMap &consensus_map_gt, const double &rt_dev, const double &mz_dev, const Peak2D::IntensityType &int_dev, const bool use_charge, double &out)=0
	Applies the algorithm. The input consensus map is compared to the ground truth. More...

bool	isSameHandle (const FeatureHandle &lhs, const FeatureHandle &rhs, const double &rt_dev, const double &mz_dev, const Peak2D::IntensityType &int_dev, const bool use_charge)
	Decides if two features are the same, based on maximum allowed deviations for retention time, m/z and intensity. More...

Protected Types
typedef ConsensusFeature::HandleSetType::const_iterator	HandleIterator

Private Member Functions
	MapAlignmentEvaluationAlgorithm (const MapAlignmentEvaluationAlgorithm &)
	Copy constructor is not implemented -> private. More...

MapAlignmentEvaluationAlgorithm &	operator= (const MapAlignmentEvaluationAlgorithm &)
	Assignment operator is not implemented -> private. More...

Detailed Description

Base class for all Caap evaluation algorithms.

These algorithms evaluates alignment results against a ground truth.

Member Typedef Documentation

◆ HandleIterator

typedef ConsensusFeature::HandleSetType::const_iterator HandleIterator

protected

Constructor & Destructor Documentation

◆ MapAlignmentEvaluationAlgorithm() [1/2]

MapAlignmentEvaluationAlgorithm ( )

Default constructor.

◆ ~MapAlignmentEvaluationAlgorithm()

virtual ~MapAlignmentEvaluationAlgorithm ( )

virtual

Destructor.

◆ MapAlignmentEvaluationAlgorithm() [2/2]

MapAlignmentEvaluationAlgorithm ( const MapAlignmentEvaluationAlgorithm & )

private

Copy constructor is not implemented -> private.

Member Function Documentation

◆ evaluate()

virtual void evaluate	(	const ConsensusMap &	conensus_map_in,
		const ConsensusMap &	consensus_map_gt,
		const double &	rt_dev,
		const double &	mz_dev,
		const Peak2D::IntensityType &	int_dev,
		const bool	use_charge,
		double &	out
	)

pure virtual

Applies the algorithm. The input consensus map is compared to the ground truth.

Implemented in MapAlignmentEvaluationAlgorithmRecall, and MapAlignmentEvaluationAlgorithmPrecision.

◆ isSameHandle()

bool isSameHandle	(	const FeatureHandle &	lhs,
		const FeatureHandle &	rhs,
		const double &	rt_dev,
		const double &	mz_dev,
		const Peak2D::IntensityType &	int_dev,
		const bool	use_charge
	)

Decides if two features are the same, based on maximum allowed deviations for retention time, m/z and intensity.

◆ operator=()

MapAlignmentEvaluationAlgorithm& operator= ( const MapAlignmentEvaluationAlgorithm & )