LayerAnnotatorPeptideID Class Reference

#include <OpenMS/VISUAL/LayerDataBase.h>

Inheritance diagram for LayerAnnotatorPeptideID:

Collaboration diagram for LayerAnnotatorPeptideID:

Public Member Functions
	LayerAnnotatorPeptideID (QWidget *gui_lock)
Public Member Functions inherited from LayerAnnotatorBase
	LayerAnnotatorBase (const FileTypeList &supported_types, const String &file_dialog_text, QWidget *gui_lock)
	C'tor with params. More...
virtual	~LayerAnnotatorBase ()=default
	Make D'tor virtual for correct destruction from pointers to base. More...
bool	annotateWithFileDialog (LayerDataBase &layer, LogWindow &log, const String &current_path) const
bool	annotateWithFilename (LayerDataBase &layer, LogWindow &log, const String &filename) const

Protected Member Functions
virtual bool	annotateWorker_ (LayerDataBase &layer, const String &filename, LogWindow &log) const

Additional Inherited Members
Static Public Member Functions inherited from LayerAnnotatorBase
static std::unique_ptr< LayerAnnotatorBase >	getAnnotatorWhichSupports (const FileTypes::Type &type)
static std::unique_ptr< LayerAnnotatorBase >	getAnnotatorWhichSupports (const String &filename)
	see getAnnotatorWhichSupports(const FileTypes::Type& type). File type is queried from filename More...
Protected Attributes inherited from LayerAnnotatorBase
const FileTypeList	supported_types_
const String	file_dialog_text_
QWidget *	gui_lock_ = nullptr
	optional widget which will be locked when calling annotateWorker_() in child-classes More...

Detailed Description

Annotate a layer with PeptideIdentifications using Layer::annotate(pepIDs, protIDs). The ID data is loaded from a file selected by the user via a file-dialog.

Constructor & Destructor Documentation

LayerAnnotatorPeptideID()

LayerAnnotatorPeptideID ( QWidget *  gui_lock )

inline

References FileTypes::IDXML, and FileTypes::MZIDENTML.

Member Function Documentation

annotateWorker_()

virtual bool annotateWorker_ ( LayerDataBase &  layer, const String &  filename, LogWindow &  log  ) const

protectedvirtual

loads the ID data from filename and calls Layer::annotate. Always returns true (unless an exception is thrown from internal sub-functions)

Implements LayerAnnotatorBase.