SpectrumIdentification Class Reference

#include <OpenMS/FORMAT/HANDLERS/MzIdentMLHandler.h>

Inheritance diagram for SpectrumIdentification:

Collaboration diagram for SpectrumIdentification:

constructors,destructors,assignment operator
String	id_
	Identifier. More...
std::vector< IdentificationHit >	hits_
	Single peptide hits. More...
	SpectrumIdentification ()=default
	Default constructor. More...
virtual	~SpectrumIdentification ()
	Destructor. More...
	SpectrumIdentification (const SpectrumIdentification &)=default
	Copy constructor. More...
	SpectrumIdentification (SpectrumIdentification &&)=default
	Move constructor. More...
SpectrumIdentification &	operator= (const SpectrumIdentification &)=default
	Assignment operator. More...
SpectrumIdentification &	operator= (SpectrumIdentification &&) &=default
	Move assignment operator. More...
bool	operator== (const SpectrumIdentification &rhs) const
	Equality operator. More...
bool	operator!= (const SpectrumIdentification &rhs) const
	Inequality operator. More...
void	setHits (const std::vector< IdentificationHit > &hits)
	sets the identification hits of this spectrum identification (corresponds to single peptide hit in the list) More...
void	addHit (const IdentificationHit &hit)
	adds a single identification hit to the hits More...
const std::vector< IdentificationHit > &	getHits () const
	returns the identification hits of this spectrum identification More...

Additional Inherited Members
Public Member Functions inherited from MetaInfoInterface
	MetaInfoInterface ()
	Constructor. More...
	MetaInfoInterface (const MetaInfoInterface &rhs)
	Copy constructor. More...
	MetaInfoInterface (MetaInfoInterface &&) noexcept
	Move constructor. More...
	~MetaInfoInterface ()
	Destructor. More...
MetaInfoInterface &	operator= (const MetaInfoInterface &rhs)
	Assignment operator. More...
MetaInfoInterface &	operator= (MetaInfoInterface &&) noexcept
	Move assignment operator. More...
void	swap (MetaInfoInterface &rhs)
	Swap contents. More...
bool	operator== (const MetaInfoInterface &rhs) const
	Equality operator. More...
bool	operator!= (const MetaInfoInterface &rhs) const
	Equality operator. More...
const DataValue &	getMetaValue (const String &name) const
	Returns the value corresponding to a string, or DataValue::EMPTY if not found. More...
DataValue	getMetaValue (const String &name, const DataValue &default_value) const
	Returns the value corresponding to a string, or a default value (e.g.: DataValue::EMPTY) if not found More...
const DataValue &	getMetaValue (UInt index) const
	Returns the value corresponding to the index, or DataValue::EMPTY if not found. More...
DataValue	getMetaValue (UInt index, const DataValue &default_value) const
	Returns the value corresponding to the index, or a default value (e.g.: DataValue::EMPTY) if not found More...
bool	metaValueExists (const String &name) const
	Returns whether an entry with the given name exists. More...
bool	metaValueExists (UInt index) const
	Returns whether an entry with the given index exists. More...
void	setMetaValue (const String &name, const DataValue &value)
	Sets the DataValue corresponding to a name. More...
void	setMetaValue (UInt index, const DataValue &value)
	Sets the DataValue corresponding to an index. More...
void	removeMetaValue (const String &name)
	Removes the DataValue corresponding to name if it exists. More...
void	removeMetaValue (UInt index)
	Removes the DataValue corresponding to index if it exists. More...
void	addMetaValues (const MetaInfoInterface &from)
	function to copy all meta values from one object to this one More...
void	getKeys (std::vector< String > &keys) const
	Fills the given vector with a list of all keys for which a value is set. More...
void	getKeys (std::vector< UInt > &keys) const
	Fills the given vector with a list of all keys for which a value is set. More...
bool	isMetaEmpty () const
	Returns if the MetaInfo is empty. More...
void	clearMetaInfo ()
	Removes all meta values. More...
Static Public Member Functions inherited from MetaInfoInterface
static MetaInfoRegistry &	metaRegistry ()
	Returns a reference to the MetaInfoRegistry. More...
Protected Member Functions inherited from MetaInfoInterface
void	createIfNotExists_ ()
	Creates the MetaInfo object if it does not exist. More...
Protected Attributes inherited from MetaInfoInterface
MetaInfo *	meta_
	Pointer to the MetaInfo object (0 by default) More...

Detailed Description

@brief Represents a object which can store the information of an analysisXML instance

Todo:

docu (Andreas)

    @ingroup Metadata

Constructor & Destructor Documentation

SpectrumIdentification() [1/3]

SpectrumIdentification ( )

default

Default constructor.

~SpectrumIdentification()

virtual ~SpectrumIdentification ( )

virtual

Destructor.

SpectrumIdentification() [2/3]

SpectrumIdentification ( const SpectrumIdentification &  )

default

Copy constructor.

SpectrumIdentification() [3/3]

SpectrumIdentification ( SpectrumIdentification &&  )

default

Move constructor.

Member Function Documentation

addHit()

void addHit

(

const IdentificationHit &

hit

)

adds a single identification hit to the hits

getHits()

const std::vector<IdentificationHit>& getHits

(

)

const

returns the identification hits of this spectrum identification

operator!=()

bool operator!=

(

const SpectrumIdentification &

rhs

)

const

Inequality operator.

operator=() [1/2]

SpectrumIdentification& operator= ( const SpectrumIdentification &  )

default

Assignment operator.

operator=() [2/2]

SpectrumIdentification& operator= ( SpectrumIdentification &&  ) &

default

Move assignment operator.

operator==()

bool operator==

(

const SpectrumIdentification &

rhs

)

const

Equality operator.

setHits()

void setHits

(

const std::vector< IdentificationHit > &

hits

)

sets the identification hits of this spectrum identification (corresponds to single peptide hit in the list)

Member Data Documentation

hits_

std::vector<IdentificationHit> hits_

protected

Single peptide hits.

id_

String id_

protected

Identifier.