#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/DATASTRUCTURES/ListUtils.h>
#include <OpenMS/DATASTRUCTURES/Param.h>
#include <OpenMS/DATASTRUCTURES/String.h>
#include <OpenMS/MATH/StatisticFunctions.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/KERNEL/MSSpectrum.h>
#include <OpenMS/KERNEL/Peak1D.h>
#include <OpenMS/METADATA/SpectrumSettings.h>
#include <OpenMS/METADATA/ID/IdentificationData.h>
#include <OpenMS/METADATA/ID/IdentificationDataConverter.h>
#include <OpenMS/FORMAT/FASTAFile.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/FORMAT/MzTabFile.h>
#include <OpenMS/FORMAT/OMSFile.h>
#include <OpenMS/FORMAT/SVOutStream.h>
#include <OpenMS/CHEMISTRY/RNaseDigestion.h>
#include <OpenMS/CHEMISTRY/RNaseDB.h>
#include <OpenMS/CHEMISTRY/RibonucleotideDB.h>
#include <OpenMS/CHEMISTRY/ElementDB.h>
#include <OpenMS/CHEMISTRY/ModifiedNASequenceGenerator.h>
#include <OpenMS/CHEMISTRY/NASequence.h>
#include <OpenMS/PROCESSING/FILTERING/ThresholdMower.h>
#include <OpenMS/PROCESSING/FILTERING/NLargest.h>
#include <OpenMS/PROCESSING/FILTERING/WindowMower.h>
#include <OpenMS/PROCESSING/SCALING/Normalizer.h>
#include <OpenMS/CHEMISTRY/NucleicAcidSpectrumGenerator.h>
#include <OpenMS/COMPARISON/SpectrumAlignment.h>
#include <OpenMS/ANALYSIS/ID/MetaboliteSpectralMatching.h>
#include <OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h>
#include <OpenMS/PROCESSING/ID/IDFilter.h>
#include <QtCore/QProcess>
#include <algorithm>
#include <iostream>
#include <vector>
#include <map>
#include <regex>

Include dependency graph for NucleicAcidSearchEngine.cpp:

Classes
class	NucleicAcidSearchEngine

struct	NucleicAcidSearchEngine::PrecursorInfo

struct	NucleicAcidSearchEngine::AnnotatedHit

class	NucleicAcidSearchEngine::HasInvalidLength

Macros
#define	NUMBER_OF_THREADS (1)

Functions
int	main (int argc, const char **argv)

Class Documentation

◆ NucleicAcidSearchEngine::AnnotatedHit

struct NucleicAcidSearchEngine::AnnotatedHit

Collaboration diagram for NucleicAcidSearchEngine::AnnotatedHit:

[legend]

Class Members
vector< PeakAnnotation >	annotations
IdentifiedOligoRef	oligo_ref
double	precursor_error_ppm
const PrecursorInfo *	precursor_ref
NASequence	sequence

Macro Definition Documentation

◆ NUMBER_OF_THREADS

#define NUMBER_OF_THREADS (1)

Function Documentation

◆ main()

int main	(	int	argc,
		const char **	argv
	)

References TOPPBase::main().

Classes