| addInEdge(TOPPASEdge *edge) | TOPPASVertex |  | 
  | addOutEdge(TOPPASEdge *edge) | TOPPASVertex |  | 
  | allInputsReady() | TOPPASVertex |  | 
  | allow_output_recycling_ | TOPPASVertex | protected | 
  | boundingRect() const override | TOPPASToolVertex | virtual | 
  | breakpoint_set_ | TOPPASToolVertex | protected | 
  | brush_color_ | TOPPASVertex | protected | 
  | buildRoundPackages(RoundPackages &pkg, String &error_msg) | TOPPASVertex |  | 
  | clicked() | TOPPASVertex | signal | 
  | ConstEdgeIterator typedef | TOPPASVertex |  | 
  | contextMenuEvent(QGraphicsSceneContextMenuEvent *event) override | TOPPASVertex | protected | 
  | createDirs() | TOPPASToolVertex |  | 
  | debugOut_(const String &) const | TOPPASVertex | inlineprotected | 
  | DFS_BLACK enum value | TOPPASVertex |  | 
  | DFS_COLOR enum name | TOPPASVertex |  | 
  | dfs_color_ | TOPPASVertex | protected | 
  | DFS_GRAY enum value | TOPPASVertex |  | 
  | DFS_WHITE enum value | TOPPASVertex |  | 
  | doesParamChangeInvalidate_() | TOPPASToolVertex | protected | 
  | edge_being_created_ | TOPPASVertex | protected | 
  | EdgeContainer typedef | TOPPASVertex |  | 
  | EdgeIterator typedef | TOPPASVertex |  | 
  | editParam() | TOPPASToolVertex |  | 
  | emitToolStarted() | TOPPASToolVertex | virtual | 
  | executionFinished(int ec, QProcess::ExitStatus es) | TOPPASToolVertex | slot | 
  | finished_ | TOPPASVertex | protected | 
  | finishHoveringEdge() | TOPPASVertex | signal | 
  | forwardTOPPOutput() | TOPPASToolVertex | slot | 
  | get3CharsNumber_(UInt number) const | TOPPASVertex | protected | 
  | getDFSColor() | TOPPASVertex |  | 
  | getFileNames(int param_index, int round) const | TOPPASVertex |  | 
  | getFileNames() const | TOPPASVertex |  | 
  | getFullOutputDirectory() const | TOPPASToolVertex |  | 
  | getInputParameters(QVector< IOInfo > &input_infos) const | TOPPASToolVertex |  | 
  | getName() const override | TOPPASToolVertex | virtual | 
  | getOutputDir() const | TOPPASToolVertex |  | 
  | getOutputFiles() const | TOPPASVertex |  | 
  | getOutputParameters(QVector< IOInfo > &output_infos) const | TOPPASToolVertex |  | 
  | getParam() | TOPPASToolVertex |  | 
  | getParameters_(QVector< IOInfo > &io_infos, bool input_params) const | TOPPASToolVertex | protected | 
  | getScene_() const | TOPPASToolVertex | protected | 
  | getStatus() const | TOPPASToolVertex |  | 
  | getSubtreeStatus() const | TOPPASVertex |  | 
  | getTopoNr() | TOPPASVertex |  | 
  | getType() const | TOPPASToolVertex |  | 
  | hoveringEdgePosChanged(const QPointF &new_pos) | TOPPASVertex | signal | 
  | in_edges_ | TOPPASVertex | protected | 
  | incomingEdgesCount() | TOPPASVertex |  | 
  | inEdgeHasChanged() override | TOPPASToolVertex | slot | 
  | inEdgesBegin() const | TOPPASVertex |  | 
  | inEdgesEnd() const | TOPPASVertex |  | 
  | initParam_(const QString &old_ini_file="") | TOPPASToolVertex | protected | 
  | invertRecylingMode() override | TOPPASToolVertex | virtual | 
  | isFinished() const | TOPPASVertex |  | 
  | isReachable() | TOPPASVertex |  | 
  | isRecyclingEnabled() const | TOPPASVertex |  | 
  | isToolReady() const | TOPPASToolVertex |  | 
  | isTopoSortMarked() | TOPPASVertex |  | 
  | isUpstreamFinished() const | TOPPASVertex |  | 
  | itemDragged(qreal dx, qreal dy) | TOPPASVertex | signal | 
  | markUnreachable() | TOPPASVertex | virtual | 
  | mouseDoubleClickEvent(QGraphicsSceneMouseEvent *e) override | TOPPASToolVertex | protected | 
  | mouseMoveEvent(QGraphicsSceneMouseEvent *e) override | TOPPASVertex | protected | 
  | mousePressEvent(QGraphicsSceneMouseEvent *e) override | TOPPASVertex | protected | 
  | mouseReleaseEvent(QGraphicsSceneMouseEvent *e) override | TOPPASVertex | protected | 
  | moveNewEdgeTo_(const QPointF &pos) | TOPPASVertex | protectedvirtual | 
  | name_ | TOPPASToolVertex | protected | 
  | newHoveringEdge(const QPointF &pos) | TOPPASVertex | signal | 
  | numIterations() | TOPPASToolVertex |  | 
  | openContainingFolder() | TOPPASToolVertex |  | 
  | openInTOPPView() | TOPPASToolVertex |  | 
  | operator=(const TOPPASToolVertex &rhs) | TOPPASToolVertex |  | 
  | OpenMS::TOPPASVertex::operator=(const TOPPASVertex &rhs) | TOPPASVertex |  | 
  | out_edges_ | TOPPASVertex | protected | 
  | outEdgeHasChanged() override | TOPPASToolVertex | slot | 
  | outEdgesBegin() const | TOPPASVertex |  | 
  | outEdgesEnd() const | TOPPASVertex |  | 
  | outgoingEdgesCount() | TOPPASVertex |  | 
  | output_files_ | TOPPASVertex | protected | 
  | paint(QPainter *painter, const QStyleOptionGraphicsItem *option, QWidget *widget) override | TOPPASToolVertex |  | 
  | OpenMS::TOPPASVertex::paint(QPainter *painter, const QStyleOptionGraphicsItem *, QWidget *, bool round_shape=true) | TOPPASVertex |  | 
  | param_ | TOPPASToolVertex | protected | 
  | parameterChanged(const bool invalidates_running_pipeline) | TOPPASVertex | signal | 
  | pen_color_ | TOPPASVertex | protected | 
  | reachable_ | TOPPASVertex | protected | 
  | refreshParameters() | TOPPASToolVertex |  | 
  | released() | TOPPASVertex | signal | 
  | removeInEdge(TOPPASEdge *edge) | TOPPASVertex |  | 
  | removeOutEdge(TOPPASEdge *edge) | TOPPASVertex |  | 
  | renameOutput_() | TOPPASToolVertex | protected | 
  | reset(bool reset_all_files=false) override | TOPPASToolVertex | virtual | 
  | round_counter_ | TOPPASVertex | protected | 
  | round_total_ | TOPPASVertex | protected | 
  | RoundPackage typedef | TOPPASVertex |  | 
  | RoundPackageConstIt typedef | TOPPASVertex |  | 
  | RoundPackageIt typedef | TOPPASVertex |  | 
  | RoundPackages typedef | TOPPASVertex |  | 
  | run() override | TOPPASToolVertex | virtual | 
  | setDFSColor(DFS_COLOR color) | TOPPASVertex |  | 
  | setParam(const Param ¶m) | TOPPASToolVertex |  | 
  | setRecycling(const bool is_enabled) | TOPPASVertex |  | 
  | setTopoNr(UInt nr) override | TOPPASToolVertex | virtual | 
  | setTopoSortMarked(bool b) | TOPPASVertex |  | 
  | shape() const final | TOPPASVertex |  | 
  | smartFileNames_(std::vector< QStringList > &filenames) | TOPPASToolVertex | protected | 
  | somethingHasChanged() | TOPPASVertex | signal | 
  | status_ | TOPPASToolVertex | protected | 
  | SUBSTREESTATUS enum name | TOPPASVertex |  | 
  | tmp_path_ | TOPPASToolVertex | protected | 
  | toggleBreakpoint() | TOPPASToolVertex |  | 
  | TOOL_CRASH enum value | TOPPASToolVertex |  | 
  | TOOL_READY enum value | TOPPASToolVertex |  | 
  | tool_ready_ | TOPPASToolVertex | protected | 
  | TOOL_RUNNING enum value | TOPPASToolVertex |  | 
  | TOOL_SCHEDULED enum value | TOPPASToolVertex |  | 
  | TOOL_SUCCESS enum value | TOPPASToolVertex |  | 
  | toolCrashed() | TOPPASToolVertex | signal | 
  | toolCrashedSlot() | TOPPASToolVertex | slot | 
  | toolFailed(const QString &message="") | TOPPASToolVertex | signal | 
  | toolFailedSlot() | TOPPASToolVertex | slot | 
  | toolFinished() | TOPPASToolVertex | signal | 
  | toolFinishedSlot() | TOPPASToolVertex | slot | 
  | toolnameWithWhitespacesForFancyWordWrapping_(QPainter *painter, const QString &str) | TOPPASToolVertex | protected | 
  | toolScheduledSlot() | TOPPASToolVertex | virtualslot | 
  | toolStarted() | TOPPASToolVertex | signal | 
  | toolStartedSlot() | TOPPASToolVertex | slot | 
  | TOOLSTATUS enum name | TOPPASToolVertex |  | 
  | TOOLSTATUS_SIZE enum value | TOPPASToolVertex |  | 
  | topo_nr_ | TOPPASVertex | protected | 
  | topo_sort_marked_ | TOPPASVertex | protected | 
  | TOPPASToolVertex() | TOPPASToolVertex |  | 
  | TOPPASToolVertex(const String &name, const String &type="") | TOPPASToolVertex |  | 
  | TOPPASToolVertex(const TOPPASToolVertex &rhs) | TOPPASToolVertex |  | 
  | TOPPASVertex() | TOPPASVertex |  | 
  | TOPPASVertex(const TOPPASVertex &rhs) | TOPPASVertex |  | 
  | toppOutputReady(const QString &out) | TOPPASToolVertex | signal | 
  | TV_ALLFINISHED enum value | TOPPASVertex |  | 
  | TV_UNFINISHED enum value | TOPPASVertex |  | 
  | TV_UNFINISHED_INBRANCH enum value | TOPPASVertex |  | 
  | type_ | TOPPASToolVertex | protected | 
  | updateCurrentOutputFileNames(const RoundPackages &pkg, String &error_message) | TOPPASToolVertex |  | 
  | writeParam_(const Param ¶m, const QString &ini_file) | TOPPASToolVertex | protected | 
  | ~TOPPASToolVertex() override=default | TOPPASToolVertex |  | 
  | ~TOPPASVertex() override=default | TOPPASVertex |  |