ProtonDistributionModel Member List

This is the complete list of members for ProtonDistributionModel, including all inherited members.

bb_charge_	ProtonDistributionModel	protected
bb_charge_full_	ProtonDistributionModel	protected
bb_charge_ion_c_term_	ProtonDistributionModel	protected
bb_charge_ion_n_term_	ProtonDistributionModel	protected
calcChargeStateIntensities_(const AASequence &peptide, const AASequence &n_term_ion, const AASequence &c_term_ion, Int charge, Residue::ResidueType n_term_type, std::vector< double > &n_term_intensities, std::vector< double > &c_term_intensities, FragmentationType type)	ProtonDistributionModel	protected
calcChargeStateIntensities_(const AASequence &peptide, const AASequence &n_term_ion, const AASequence &c_term_ion, Int charge, Residue::ResidueType n_term_type, double &n_term1, double &c_term1, double &n_term2, double &c_term2, FragmentationType type)	ProtonDistributionModel	protected
calculateProtonDistribution_(const AASequence &peptide, Int charge, Residue::ResidueType res_type=Residue::YIon, bool fixed_proton=false, Size cleavage_site=0, bool use_most_basic_site=false)	ProtonDistributionModel	protected
calculateProtonDistributionCharge1_(const AASequence &peptide, Residue::ResidueType res_type)	ProtonDistributionModel	protected
calculateProtonDistributionCharge2_(const AASequence &peptide, Residue::ResidueType res_type, bool fixed_proton, Size cleavage_site, bool use_most_basic_site)	ProtonDistributionModel	protected
calculateProtonDistributionGreater2_(const AASequence &peptide, Int charge, Residue::ResidueType res_type)	ProtonDistributionModel	protected
calculateProtonDistributionIonPair_(const AASequence &peptide, Residue::ResidueType type, Size cleavage_site)	ProtonDistributionModel	protected
ChargeDirected enum value	ProtonDistributionModel
ChargeRemote enum value	ProtonDistributionModel
check_defaults_	DefaultParamHandler	protected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
E_	ProtonDistributionModel	protected
E_c_term_	ProtonDistributionModel	protected
E_n_term_	ProtonDistributionModel	protected
error_name_	DefaultParamHandler	protected
FragmentationType enum name	ProtonDistributionModel
getChargeStateIntensities(const AASequence &peptide, const AASequence &n_term_ion, const AASequence &c_term_ion, Int charge, Residue::ResidueType n_term_type, std::vector< double > &n_term_intensities, std::vector< double > &c_term_intensities, FragmentationType type)	ProtonDistributionModel
getDefaults() const	DefaultParamHandler
getLeftAndRightGBValues_(const AASequence &peptide, double &left_gb, double &right_gb, Size position)	ProtonDistributionModel	protected
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getProtonDistribution(std::vector< double > &bb_charges, std::vector< double > &sc_charges, const AASequence &peptide, Int charge, Residue::ResidueType res_type=Residue::YIon)	ProtonDistributionModel
getSubsections() const	DefaultParamHandler
operator=(const ProtonDistributionModel &pdm)	ProtonDistributionModel
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler	virtual
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
ProtonDistributionModel()	ProtonDistributionModel
ProtonDistributionModel(const ProtonDistributionModel &model)	ProtonDistributionModel
sc_charge_	ProtonDistributionModel	protected
sc_charge_full_	ProtonDistributionModel	protected
sc_charge_ion_c_term_	ProtonDistributionModel	protected
sc_charge_ion_n_term_	ProtonDistributionModel	protected
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
setPeptideProtonDistribution(const std::vector< double > &bb_charge, const std::vector< double > &sc_charge)	ProtonDistributionModel
SideChain enum value	ProtonDistributionModel
subsections_	DefaultParamHandler	protected
updateMembers_()	DefaultParamHandler	protectedvirtual
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &prefix="")	DefaultParamHandler	static
~DefaultParamHandler()	DefaultParamHandler	virtual
~ProtonDistributionModel() override	ProtonDistributionModel