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OpenMS
2.6.0
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This is the complete list of members for OpenSwathCalibrationWorkflow, including all inherited members.
| addChromatograms(MSChromatogram &base_chrom, const MSChromatogram &newchrom) | OpenSwathCalibrationWorkflow | static |
| CMD enum value | ProgressLogger | |
| current_logger_ | ProgressLogger | mutableprotected |
| doDataNormalization_(const OpenSwath::LightTargetedExperiment &transition_exp_, const std::vector< OpenMS::MSChromatogram > &chromatograms, TransformationDescription &im_trafo, std::vector< OpenSwath::SwathMap > &swath_maps, double min_rsq, double min_coverage, const Param &default_ffparam, const Param &irt_detection_param, const Param &calibration_param) | OpenSwathCalibrationWorkflow | |
| endProgress() const | ProgressLogger | |
| getLogType() const | ProgressLogger | |
| GUI enum value | ProgressLogger | |
| last_invoke_ | ProgressLogger | mutableprotected |
| LogType enum name | ProgressLogger | |
| logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic |
| ms1_map_ | OpenSwathWorkflowBase | protected |
| MS1Extraction_(const OpenSwath::SpectrumAccessPtr ms1_map, const std::vector< OpenSwath::SwathMap > &swath_maps, std::vector< MSChromatogram > &ms1_chromatograms, Interfaces::IMSDataConsumer *chromConsumer, const ChromExtractParams &cp, const OpenSwath::LightTargetedExperiment &transition_exp, const TransformationDescription &trafo_inverse, bool ms1only=false, int ms1_isotopes=0) | OpenSwathWorkflowBase | protected |
| nextProgress() const | ProgressLogger | |
| NONE enum value | ProgressLogger | |
| OpenSwathCalibrationWorkflow() | OpenSwathCalibrationWorkflow | inline |
| OpenSwathCalibrationWorkflow(bool use_ms1_traces) | OpenSwathCalibrationWorkflow | inlineexplicit |
| OpenSwathWorkflowBase() | OpenSwathWorkflowBase | inlineprotected |
| OpenSwathWorkflowBase(bool use_ms1_traces, bool use_ms1_ion_mobility, bool prm, int threads_outer_loop) | OpenSwathWorkflowBase | inlineprotected |
| operator=(const ProgressLogger &other) | ProgressLogger | |
| performRTNormalization(const OpenSwath::LightTargetedExperiment &irt_transitions, std::vector< OpenSwath::SwathMap > &swath_maps, TransformationDescription &im_trafo, double min_rsq, double min_coverage, const Param &feature_finder_param, const ChromExtractParams &cp_irt, const Param &irt_detection_param, const Param &calibration_param, const String &irt_mzml_out, Size debug_level, bool sonar=false, bool load_into_memory=false) | OpenSwathCalibrationWorkflow | |
| prepareExtractionCoordinates_(std::vector< OpenSwath::ChromatogramPtr > &chrom_list, std::vector< ChromatogramExtractorAlgorithm::ExtractionCoordinates > &coordinates, const OpenSwath::LightTargetedExperiment &transition_exp_used, const TransformationDescription trafo_inverse, const ChromExtractParams &cp, const bool ms1=false, const int ms1_isotopes=-1) const | OpenSwathWorkflowBase | protected |
| prm_ | OpenSwathWorkflowBase | protected |
| ProgressLogger() | ProgressLogger | |
| ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
| recursion_depth_ | ProgressLogger | protectedstatic |
| setLogType(LogType type) const | ProgressLogger | |
| setProgress(SignedSize value) const | ProgressLogger | |
| simpleExtractChromatograms_(const std::vector< OpenSwath::SwathMap > &swath_maps, const OpenSwath::LightTargetedExperiment &irt_transitions, std::vector< OpenMS::MSChromatogram > &chromatograms, const TransformationDescription &trafo, const ChromExtractParams &cp, bool sonar, bool load_into_memory) | OpenSwathCalibrationWorkflow | |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| threads_outer_loop_ | OpenSwathWorkflowBase | protected |
| type_ | ProgressLogger | mutableprotected |
| use_ms1_ion_mobility_ | OpenSwathWorkflowBase | protected |
| use_ms1_traces_ | OpenSwathWorkflowBase | protected |
| ~ProgressLogger() | ProgressLogger |
1.8.16
