| a_intensity_ | NucleicAcidSpectrumGenerator | protected |
| aB_intensity_ | NucleicAcidSpectrumGenerator | protected |
| add_a_ions_ | NucleicAcidSpectrumGenerator | protected |
| add_aB_ions_ | NucleicAcidSpectrumGenerator | protected |
| add_all_precursor_charges_ | NucleicAcidSpectrumGenerator | protected |
| add_b_ions_ | NucleicAcidSpectrumGenerator | protected |
| add_c_ions_ | NucleicAcidSpectrumGenerator | protected |
| add_d_ions_ | NucleicAcidSpectrumGenerator | protected |
| add_first_prefix_ion_ | NucleicAcidSpectrumGenerator | protected |
| add_metainfo_ | NucleicAcidSpectrumGenerator | protected |
| add_precursor_peaks_ | NucleicAcidSpectrumGenerator | protected |
| add_w_ions_ | NucleicAcidSpectrumGenerator | protected |
| add_x_ions_ | NucleicAcidSpectrumGenerator | protected |
| add_y_ions_ | NucleicAcidSpectrumGenerator | protected |
| add_z_ions_ | NucleicAcidSpectrumGenerator | protected |
| addAMinusBPeaks_(MSSpectrum &spectrum, const std::vector< double > &fragment_masses, const NASequence &oligo, Size start=0) const | NucleicAcidSpectrumGenerator | protected |
| addChargedSpectrum_(MSSpectrum &spectrum, const MSSpectrum &uncharged_spectrum, Int charge, bool add_precursor) const | NucleicAcidSpectrumGenerator | protected |
| addFragmentPeaks_(MSSpectrum &spectrum, const std::vector< double > &fragment_masses, const String &ion_type, double offset, double intensity, Size start=0) const | NucleicAcidSpectrumGenerator | protected |
| b_intensity_ | NucleicAcidSpectrumGenerator | protected |
| c_intensity_ | NucleicAcidSpectrumGenerator | protected |
| check_defaults_ | DefaultParamHandler | protected |
| d_intensity_ | NucleicAcidSpectrumGenerator | protected |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| DefaultParamHandler() | DefaultParamHandler | private |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| error_name_ | DefaultParamHandler | protected |
| getDefaults() const | DefaultParamHandler | |
| getMultipleSpectra(std::map< Int, MSSpectrum > &spectra, const NASequence &oligo, const std::set< Int > &charges, Int base_charge=1) const | NucleicAcidSpectrumGenerator | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSpectrum(MSSpectrum &spectrum, const NASequence &oligo, Int min_charge, Int max_charge) const | NucleicAcidSpectrumGenerator | |
| getSubsections() const | DefaultParamHandler | |
| getUnchargedSpectrum_(const NASequence &oligo) const | NucleicAcidSpectrumGenerator | protected |
| NucleicAcidSpectrumGenerator() | NucleicAcidSpectrumGenerator | |
| NucleicAcidSpectrumGenerator(const NucleicAcidSpectrumGenerator &source) | NucleicAcidSpectrumGenerator | |
| operator=(const NucleicAcidSpectrumGenerator &source) | NucleicAcidSpectrumGenerator | |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| param_ | DefaultParamHandler | protected |
| precursor_intensity_ | NucleicAcidSpectrumGenerator | protected |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| subsections_ | DefaultParamHandler | protected |
| updateMembers_() override | NucleicAcidSpectrumGenerator | virtual |
| w_intensity_ | NucleicAcidSpectrumGenerator | protected |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &prefix="") | DefaultParamHandler | static |
| x_intensity_ | NucleicAcidSpectrumGenerator | protected |
| y_intensity_ | NucleicAcidSpectrumGenerator | protected |
| z_intensity_ | NucleicAcidSpectrumGenerator | protected |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
| ~NucleicAcidSpectrumGenerator() override | NucleicAcidSpectrumGenerator | |
1.8.16
