This is the complete list of members for LibSVMEncoder, including all inherited members.

cmpOligos_(std::pair< Int, double > a, std::pair< Int, double > b)	LibSVMEncoder	privatestatic
destroyProblem(svm_problem *problem)	LibSVMEncoder	static
encodeCompositionVector(const String &sequence, std::vector< std::pair< Int, double > > &encoded_vector, const String &allowed_characters="ACDEFGHIKLMNPQRSTVWY")	LibSVMEncoder
encodeCompositionVectors(const std::vector< String > &sequences, const String &allowed_characters, std::vector< std::vector< std::pair< Int, double > > > &composition_vectors)	LibSVMEncoder
encodeLibSVMProblem(const std::vector< svm_node * > &vectors, std::vector< double > &labels)	LibSVMEncoder
encodeLibSVMProblemWithCompositionAndLengthVectors(const std::vector< String > &sequences, std::vector< double > &labels, const String &allowed_characters, UInt maximum_sequence_length)	LibSVMEncoder
encodeLibSVMProblemWithCompositionLengthAndWeightVectors(const std::vector< String > &sequences, std::vector< double > &labels, const String &allowed_characters)	LibSVMEncoder
encodeLibSVMProblemWithCompositionVectors(const std::vector< String > &sequences, std::vector< double > &labels, const String &allowed_characters)	LibSVMEncoder
encodeLibSVMProblemWithOligoBorderVectors(const std::vector< String > &sequences, std::vector< double > &labels, UInt k_mer_length, const String &allowed_characters, UInt border_length, bool strict=false, bool unpaired=false, bool length_encoding=false)	LibSVMEncoder
encodeLibSVMVector(const std::vector< std::pair< Int, double > > &feature_vector)	LibSVMEncoder
encodeLibSVMVectors(const std::vector< std::vector< std::pair< Int, double > > > &feature_vectors, std::vector< svm_node * > &libsvm_vectors)	LibSVMEncoder
encodeOligo(const AASequence &sequence, UInt k_mer_length, const String &allowed_characters, std::vector< std::pair< Int, double > > &values, bool is_right_border=false)	LibSVMEncoder
encodeOligoBorders(String sequence, UInt k_mer_length, const String &allowed_characters, UInt border_length, std::vector< std::pair< Int, double > > &libsvm_vector, bool strict=false, bool unpaired=false, bool length_encoding=false)	LibSVMEncoder
encodeProblemWithOligoBorderVectors(const std::vector< AASequence > &sequences, UInt k_mer_length, const String &allowed_characters, UInt border_length, std::vector< std::vector< std::pair< Int, double > > > &vectors)	LibSVMEncoder
LibSVMEncoder()	LibSVMEncoder
libSVMVectorsToString(svm_problem *vector, String &output)	LibSVMEncoder
libSVMVectorToString(svm_node *vector, String &output)	LibSVMEncoder
loadLibSVMProblem(const String &filename)	LibSVMEncoder
predictPeptideRT(const std::vector< String > &sequences, SVMWrapper &svm, const String &allowed_characters="ACDEFGHIKLMNPQRSTVWY", UInt maximum_sequence_length=50)	LibSVMEncoder	inlinestatic
storeLibSVMProblem(const String &filename, const svm_problem *problem) const	LibSVMEncoder
~LibSVMEncoder()	LibSVMEncoder