| addNewState(HMMState *state) | HiddenMarkovModel |  | 
  | addNewState(const String &name) | HiddenMarkovModel |  | 
  | addSynonymTransition(const String &name1, const String &name2, const String &synonym1, const String &synonym2) | HiddenMarkovModel |  | 
  | backward_ | HiddenMarkovModel | private | 
  | calculateBackwardPart_() | HiddenMarkovModel | protected | 
  | calculateEmissionProbabilities(Map< HMMState *, double > &emission_probs) | HiddenMarkovModel |  | 
  | calculateForwardPart_() | HiddenMarkovModel | protected | 
  | clear() | HiddenMarkovModel |  | 
  | clearInitialTransitionProbabilities() | HiddenMarkovModel |  | 
  | clearTrainingEmissionProbabilities() | HiddenMarkovModel |  | 
  | copy_(const HiddenMarkovModel &source) | HiddenMarkovModel | private | 
  | count_trans_ | HiddenMarkovModel | private | 
  | count_trans_all_ | HiddenMarkovModel | private | 
  | disableTransition(const String &s1, const String &s2) | HiddenMarkovModel |  | 
  | disableTransition_(HMMState *s1, HMMState *s2) | HiddenMarkovModel | protected | 
  | disableTransitions() | HiddenMarkovModel |  | 
  | dump() | HiddenMarkovModel |  | 
  | enabled_trans_ | HiddenMarkovModel | private | 
  | enableTransition(const String &s1, const String &s2) | HiddenMarkovModel |  | 
  | enableTransition_(HMMState *s1, HMMState *s2) | HiddenMarkovModel | protected | 
  | estimateUntrainedTransitions() | HiddenMarkovModel |  | 
  | evaluate() | HiddenMarkovModel |  | 
  | forward_ | HiddenMarkovModel | private | 
  | forwardDump() | HiddenMarkovModel |  | 
  | getBackwardVariable_(HMMState *) | HiddenMarkovModel | protected | 
  | getForwardVariable_(HMMState *) | HiddenMarkovModel | protected | 
  | getNumberOfStates() const | HiddenMarkovModel |  | 
  | getPseudoCounts() const | HiddenMarkovModel |  | 
  | getState(const String &name) | HiddenMarkovModel |  | 
  | getState(const String &name) const | HiddenMarkovModel |  | 
  | getTransitionProbability(const String &s1, const String &s2) const | HiddenMarkovModel |  | 
  | getTransitionProbability_(HMMState *s1, HMMState *s2) const | HiddenMarkovModel | protected | 
  | HiddenMarkovModel() | HiddenMarkovModel |  | 
  | HiddenMarkovModel(const HiddenMarkovModel &hmm_new) | HiddenMarkovModel |  | 
  | init_prob_ | HiddenMarkovModel | private | 
  | name_to_state_ | HiddenMarkovModel | private | 
  | operator=(const HiddenMarkovModel &) | HiddenMarkovModel |  | 
  | pseudo_counts_ | HiddenMarkovModel | private | 
  | setInitialTransitionProbability(const String &state, double prob) | HiddenMarkovModel |  | 
  | setPseudoCounts(double pseudo_counts) | HiddenMarkovModel |  | 
  | setTrainingEmissionProbability(const String &state, double prob) | HiddenMarkovModel |  | 
  | setTrainingEmissionProbability_(HMMState *state, double prob) | HiddenMarkovModel | protected | 
  | setTransitionProbability(const String &s1, const String &s2, double prob) | HiddenMarkovModel |  | 
  | setTransitionProbability_(HMMState *s1, HMMState *s2, double prob) | HiddenMarkovModel | protected | 
  | setVariableModifications(const StringList &modifications) | HiddenMarkovModel |  | 
  | states_ | HiddenMarkovModel | private | 
  | synonym_trans_ | HiddenMarkovModel | private | 
  | synonym_trans_names_ | HiddenMarkovModel | private | 
  | train() | HiddenMarkovModel |  | 
  | train_count_trans_all_ | HiddenMarkovModel | private | 
  | train_emission_prob_ | HiddenMarkovModel | private | 
  | trained_trans_ | HiddenMarkovModel | private | 
  | training_steps_count_ | HiddenMarkovModel | private | 
  | trans_ | HiddenMarkovModel | private | 
  | var_modifications_ | HiddenMarkovModel | private | 
  | write(std::ostream &out) const | HiddenMarkovModel |  | 
  | writeGraphMLFile(const String &filename) | HiddenMarkovModel |  | 
  | ~HiddenMarkovModel() | HiddenMarkovModel | virtual |