| charge_lower_bound_ | FeatureFindingMetabo | private |
| charge_upper_bound_ | FeatureFindingMetabo | private |
| check_defaults_ | DefaultParamHandler | protected |
| chrom_fwhm_ | FeatureFindingMetabo | private |
| CMD enum value | ProgressLogger | |
| computeAveragineSimScore_(const std::vector< double > &intensities, const double &molecular_weight) const | FeatureFindingMetabo | private |
| computeCosineSim_(const std::vector< double > &, const std::vector< double > &) const | FeatureFindingMetabo | private |
| current_logger_ | ProgressLogger | mutableprotected |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| DefaultParamHandler() | DefaultParamHandler | private |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| elements_ | FeatureFindingMetabo | private |
| elementsFromString_(const std::string &elements_string) const | FeatureFindingMetabo | private |
| enable_RT_filtering_ | FeatureFindingMetabo | private |
| endProgress() const | ProgressLogger | |
| error_name_ | DefaultParamHandler | protected |
| FeatureFindingMetabo() | FeatureFindingMetabo | |
| findLocalFeatures_(const std::vector< const MassTrace * > &candidates, double total_intensity, std::vector< FeatureHypothesis > &output_hypotheses) const | FeatureFindingMetabo | private |
| getDefaults() const | DefaultParamHandler | |
| getLogType() const | ProgressLogger | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSubsections() const | DefaultParamHandler | |
| getTheoreticIsotopicMassWindow_(const std::vector< Element const * > alphabet, int peakOffset) const | FeatureFindingMetabo | private |
| GUI enum value | ProgressLogger | |
| isLegalIsotopePattern_(const FeatureHypothesis &feat_hypo) const | FeatureFindingMetabo | private |
| isotope_filt_svm_ | FeatureFindingMetabo | private |
| isotope_filtering_model_ | FeatureFindingMetabo | private |
| last_invoke_ | ProgressLogger | mutableprotected |
| loadIsotopeModel_(const String &) | FeatureFindingMetabo | private |
| local_mz_range_ | FeatureFindingMetabo | private |
| local_rt_range_ | FeatureFindingMetabo | private |
| LogType enum name | ProgressLogger | |
| logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic |
| nextProgress() const | ProgressLogger | |
| NONE enum value | ProgressLogger | |
| OpenMS::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
| OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger | |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| param_ | DefaultParamHandler | protected |
| ProgressLogger() | ProgressLogger | |
| ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
| recursion_depth_ | ProgressLogger | protectedstatic |
| remove_single_traces_ | FeatureFindingMetabo | private |
| report_chromatograms_ | FeatureFindingMetabo | private |
| report_convex_hulls_ | FeatureFindingMetabo | private |
| report_summed_ints_ | FeatureFindingMetabo | private |
| run(std::vector< MassTrace > &input_mtraces, FeatureMap &output_featmap, std::vector< std::vector< OpenMS::MSChromatogram > > &output_chromatograms) | FeatureFindingMetabo | |
| scoreMZ_(const MassTrace &, const MassTrace &, Size isotopic_position, Size charge, Range isotope_window) const | FeatureFindingMetabo | private |
| scoreMZByExpectedMean_(Size iso_pos, Size charge, const double diff_mz, double mt_variances) const | FeatureFindingMetabo | private |
| scoreMZByExpectedRange_(Size charge, const double diff_mz, double mt_variances, Range isotope_window) const | FeatureFindingMetabo | private |
| scoreRT_(const MassTrace &, const MassTrace &) const | FeatureFindingMetabo | private |
| setLogType(LogType type) const | ProgressLogger | |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| setProgress(SignedSize value) const | ProgressLogger | |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| subsections_ | DefaultParamHandler | protected |
| svm_feat_centers_ | FeatureFindingMetabo | private |
| svm_feat_scales_ | FeatureFindingMetabo | private |
| total_intensity_ | FeatureFindingMetabo | private |
| type_ | ProgressLogger | mutableprotected |
| updateMembers_() override | FeatureFindingMetabo | protectedvirtual |
| use_mz_scoring_by_element_range_ | FeatureFindingMetabo | private |
| use_mz_scoring_C13_ | FeatureFindingMetabo | private |
| use_smoothed_intensities_ | FeatureFindingMetabo | private |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &prefix="") | DefaultParamHandler | static |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
| ~FeatureFindingMetabo() override | FeatureFindingMetabo | |
| ~ProgressLogger() | ProgressLogger | |
1.8.16
