Constants.h

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// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2020.
//
// This software is released under a three-clause BSD license:
//  * Redistributions of source code must retain the above copyright
//    notice, this list of conditions and the following disclaimer.
//  * Redistributions in binary form must reproduce the above copyright
//    notice, this list of conditions and the following disclaimer in the
//    documentation and/or other materials provided with the distribution.
//  * Neither the name of any author or any participating institution
//    may be used to endorse or promote products derived from this software
//    without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
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// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
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// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg$
// $Authors: Marc Sturm $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/config.h>
#include <string>
 
namespace OpenMS
{
  namespace Constants
  {
 
    extern OPENMS_DLLAPI const double  PI;
 
    extern OPENMS_DLLAPI const double  E;
 
    extern OPENMS_DLLAPI double EPSILON;
 
 
    extern OPENMS_DLLAPI const double   ELEMENTARY_CHARGE;           // C
 
    extern OPENMS_DLLAPI const double   e0;
 
    extern OPENMS_DLLAPI const double   ELECTRON_MASS;                   // kg
 
    extern OPENMS_DLLAPI const double ELECTRON_MASS_U;             // u
 
    extern OPENMS_DLLAPI const double   PROTON_MASS;                     // kg
 
    extern OPENMS_DLLAPI const double PROTON_MASS_U;               // u
 
    extern OPENMS_DLLAPI const double C13C12_MASSDIFF_U;     // u
 
    extern OPENMS_DLLAPI const double   NEUTRON_MASS;                    // kg
 
    extern OPENMS_DLLAPI const double NEUTRON_MASS_U;              // u
 
    extern OPENMS_DLLAPI const double   AVOGADRO;
 
    extern OPENMS_DLLAPI const double   NA;
 
    extern OPENMS_DLLAPI const double   MOL;
 
    extern OPENMS_DLLAPI const double   BOLTZMANN;
 
    extern OPENMS_DLLAPI const double   k;
 
    extern OPENMS_DLLAPI const double   PLANCK;
 
    extern OPENMS_DLLAPI const double   h;
 
    extern OPENMS_DLLAPI const double   GAS_CONSTANT;
 
    extern OPENMS_DLLAPI const double R;
 
    extern OPENMS_DLLAPI const double   FARADAY;
 
    extern OPENMS_DLLAPI const double   F;
 
    extern OPENMS_DLLAPI const double   BOHR_RADIUS;
 
    extern OPENMS_DLLAPI const double   a0;
 
    //  the following values from:
    //  P.W.Atkins: Physical Chemistry, 5th ed., Oxford University Press, 1995
 
    extern OPENMS_DLLAPI const double   VACUUM_PERMITTIVITY;
 
    extern OPENMS_DLLAPI const double   VACUUM_PERMEABILITY;
 
    extern OPENMS_DLLAPI const double   SPEED_OF_LIGHT;
 
    extern OPENMS_DLLAPI const double   c;
 
    extern OPENMS_DLLAPI const double   GRAVITATIONAL_CONSTANT;
 
    extern OPENMS_DLLAPI const double   FINE_STRUCTURE_CONSTANT;
 
 
    extern OPENMS_DLLAPI const double   DEG_PER_RAD;
 
    extern OPENMS_DLLAPI const double   RAD_PER_DEG;
 
    extern OPENMS_DLLAPI const double   MM_PER_INCH;
 
    extern OPENMS_DLLAPI const double   M_PER_FOOT;
 
    extern OPENMS_DLLAPI const double   JOULE_PER_CAL;
 
    extern OPENMS_DLLAPI const double   CAL_PER_JOULE;
 
    namespace UserParam
    {
      extern OPENMS_DLLAPI const std::string CONCAT_PEPTIDE;
 
      extern OPENMS_DLLAPI const std::string   LOCALIZED_MODIFICATIONS_USERPARAM;
 
      extern OPENMS_DLLAPI const std::string   MERGED_CHROMATOGRAM_MZS;
 
      extern OPENMS_DLLAPI const std::string   PRECURSOR_ERROR_PPM_USERPARAM;
 
      extern OPENMS_DLLAPI const std::string   FRAGMENT_ERROR_MEDIAN_PPM_USERPARAM;
 
      extern OPENMS_DLLAPI const std::string   FRAGMENT_ANNOTATION_USERPARAM;
 
      extern OPENMS_DLLAPI const std::string   SPECTRUM_REFERENCE;
 
      extern OPENMS_DLLAPI const std::string   TARGET_DECOY;
 
      extern OPENMS_DLLAPI const std::string   DELTA_SCORE;
 
      extern OPENMS_DLLAPI const std::string   ISOTOPE_ERROR;
 
      // Cross-Linking Mass Spectrometry user parameters
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_SCORE;
 
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_BETA_SEQUENCE;
 
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_BETA_ACCESSIONS;
 
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_XL_POS1;
 
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_XL_POS2;
 
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_XL_POS1_PROT;
 
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_XL_POS2_PROT;
 
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_XL_TYPE;
 
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_XL_RANK;
 
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_XL_MOD;
 
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_XL_MASS;
 
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_XL_TERM_SPEC_ALPHA;
 
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_XL_TERM_SPEC_BETA;
 
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_HEAVY_SPEC_RT;
 
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_HEAVY_SPEC_MZ;
 
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_HEAVY_SPEC_REF;
 
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_TARGET_DECOY_ALPHA;
 
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_TARGET_DECOY_BETA;
 
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_BETA_PEPEV_PRE;
 
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_BETA_PEPEV_POST;
 
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_BETA_PEPEV_START;
 
      extern OPENMS_DLLAPI const std::string   OPENPEPXL_BETA_PEPEV_END;
 
      extern OPENMS_DLLAPI const std::string   XFDR_FDR;
    }
 
  }
}