AScore.h File Reference

#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/DATASTRUCTURES/DefaultParamHandler.h>
#include <OpenMS/DATASTRUCTURES/String.h>
#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/KERNEL/MSSpectrum.h>
#include <OpenMS/ANALYSIS/RNPXL/PScore.h>
#include <limits>
#include <vector>

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Classes
struct	ProbablePhosphoSites
class	AScore
	Implementation of the Ascore For a given peptide sequence and its MS/MS spectrum it identifies the most probable phosphorylation-site(s). For each phosphorylation site a probability score is calculated. The algorithm is implemented according to Beausoleil et al. (Nat. Biotechnol. 2006). More...

Namespaces
	OpenMS
	Main OpenMS namespace.

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Class Documentation

OpenMS::ProbablePhosphoSites

struct OpenMS::ProbablePhosphoSites

Collaboration diagram for ProbablePhosphoSites:

Class Members
Size	AScore
Size	first
Size	peak_depth	filtering level that gave rise to maximum discriminatory score
Size	second
Size	seq_1	index of best permutation with site in phosphorylated state
Size	seq_2	index of permutation with site in unphosphorylated state