PeakGroup Member List

This is the complete list of members for PeakGroup, including all inherited members.

avg_da_error_	PeakGroup	private
avg_ppm_error_	PeakGroup	private
begin() const noexcept	PeakGroup
begin() noexcept	PeakGroup
charge_dummy enum value	PeakGroup
charge_score_	PeakGroup	private
clear_()	PeakGroup	private
empty() const	PeakGroup
end() const noexcept	PeakGroup
end() noexcept	PeakGroup
getAbsChargeRange() const	PeakGroup
getAbsDaError_(LogMzPeak &p) const	PeakGroup	private
getAbsPPMError_(const LogMzPeak &p) const	PeakGroup	private
getAvgDaError() const	PeakGroup
getAvgPPMError() const	PeakGroup
getChargeIntensity(int abs_charge) const	PeakGroup
getChargeIsotopeCosine(int abs_charge) const	PeakGroup
getChargeScore() const	PeakGroup
getChargeSNR(int abs_charge) const	PeakGroup
getIndex() const	PeakGroup
getIntensity() const	PeakGroup
getIsotopeCosine() const	PeakGroup
getIsotopeDaDistance() const	PeakGroup
getIsotopeIntensities() const	PeakGroup
getMinNegativeIsotopeIndex() const	PeakGroup
getMonoMass() const	PeakGroup
getMzRange(int abs_charge) const	PeakGroup
getNoisePeakBegin() const noexcept	PeakGroup
getNoisePeakBegin() noexcept	PeakGroup
getNoisePeakEnd() const noexcept	PeakGroup
getNoisePeakEnd() noexcept	PeakGroup
getNoisePeakPower_(const std::vector< LogMzPeak > &noisy_peaks, const std::vector< LogMzPeak > &signal_peaks) const	PeakGroup	private
getQscore() const	PeakGroup
getQvalue(PeakGroup::TargetDummyType target_dummy_type=PeakGroup::TargetDummyType::target) const	PeakGroup
getRepAbsCharge() const	PeakGroup
getRepMzRange() const	PeakGroup
getScanNumber() const	PeakGroup
getSNR() const	PeakGroup
getTargetDummyType() const	PeakGroup
index_	PeakGroup	private
intensity_	PeakGroup	private
is_positive_	PeakGroup	private
is_targeted_	PeakGroup	private
iso_da_distance_	PeakGroup	private
isotope_cosine_score_	PeakGroup	private
isotope_dummy enum value	PeakGroup
isPositive() const	PeakGroup
isSignalMZ(double mz, double tol) const	PeakGroup
isTargeted() const	PeakGroup
LogMzPeak typedef	PeakGroup	private
logMzpeaks_	PeakGroup	private
max_abs_charge_	PeakGroup	private
max_snr_abs_charge_	PeakGroup	private
min_abs_charge_	PeakGroup	private
min_negative_isotope_index_	PeakGroup	private
monoisotopic_mass_	PeakGroup	private
negative_iso_peaks_	PeakGroup	private
noise_dummy enum value	PeakGroup
operator<(const PeakGroup &a) const	PeakGroup
operator=(const PeakGroup &t)=default	PeakGroup
operator==(const PeakGroup &a) const	PeakGroup
operator>(const PeakGroup &a) const	PeakGroup
operator[](Size i) const	PeakGroup
PeakGroup()=default	PeakGroup
PeakGroup(int min_abs_charge, int max_abs_charge, bool is_positive)	PeakGroup	explicit
PeakGroup(const PeakGroup &)=default	PeakGroup
PeakGroup(PeakGroup &&other)=default	PeakGroup
per_charge_cos_	PeakGroup	private
per_charge_int_	PeakGroup	private
per_charge_noise_pwr_	PeakGroup	private
per_charge_snr_	PeakGroup	private
per_charge_sum_signal_squared_	PeakGroup	private
per_isotope_int_	PeakGroup	private
PrecalculatedAveragine typedef	PeakGroup	private
push_back(const FLASHDeconvHelperStructs::LogMzPeak &pg)	PeakGroup
Qscore(float qscore)	PeakGroup
qscore_	PeakGroup	private
qvalue_	PeakGroup	private
recruitAllPeaksInSpectrum(const MSSpectrum &spec, double tol, const FLASHDeconvHelperStructs::PrecalculatedAveragine &avg, double mono_mass, const std::unordered_set< double > &excluded_peak_mzs)	PeakGroup
reserve(Size n)	PeakGroup
scan_number_	PeakGroup	private
setAbsChargeRange(int min_abs_charge, int max_abs_charge)	PeakGroup
setAvgPPMError(float error)	PeakGroup
setChargeIsotopeCosine(int abs_charge, float cos)	PeakGroup
setChargeScore(float charge_score)	PeakGroup
setChargeSNR(int abs_charge, float c_snr)	PeakGroup
setIndex(uint i)	PeakGroup
setIsotopeCosine(float cos)	PeakGroup
setIsotopeDaDistance(double d)	PeakGroup
setMonoisotopicMass(double mono_mass)	PeakGroup
setQvalue(float q, PeakGroup::TargetDummyType target_dummy_type)	PeakGroup
setRepAbsCharge(int max_snr_abs_charge)	PeakGroup
setScanNumber(int scan_number)	PeakGroup
setSNR(float snr)	PeakGroup
setTargetDummyType(PeakGroup::TargetDummyType index)	PeakGroup
setTargeted()	PeakGroup
size() const noexcept	PeakGroup
snr_	PeakGroup	private
sort()	PeakGroup
swap(std::vector< FLASHDeconvHelperStructs::LogMzPeak > &x)	PeakGroup
target enum value	PeakGroup
target_dummy_type_	PeakGroup	private
TargetDummyType enum name	PeakGroup
updateAvgDaError_()	PeakGroup	private
updateAvgPPMError_()	PeakGroup	private
updateChargeFitScoreAndChargeIntensities_()	PeakGroup	private
updateChargeRange_(std::vector< LogMzPeak > &noisy_peaks)	PeakGroup	private
updateMonoMassAndIsotopeIntensities()	PeakGroup
updatePerChargeCos_(const FLASHDeconvHelperStructs::PrecalculatedAveragine &avg)	PeakGroup	private
updatePerChargeInformation_(const std::vector< LogMzPeak > &noisy_peaks)	PeakGroup	private
updateQscore(std::vector< LogMzPeak > &noisy_peaks, const FLASHDeconvHelperStructs::PrecalculatedAveragine &avg, double min_cos, int allowed_iso_error=1)	PeakGroup
updateSNR_()	PeakGroup	private
~PeakGroup()=default	PeakGroup