| addConsensusFeature_(const std::vector< Size > &indices, const KDTreeFeatureMaps &kd_data, ConsensusMap &out) const | FeatureGroupingAlgorithmKD | private |
| check_defaults_ | DefaultParamHandler | protected |
| CMD enum value | ProgressLogger | |
| computeBestClusterForCenter_(Size i, std::vector< Size > &cf_indices, const std::vector< Int > &assigned, const KDTreeFeatureMaps &kd_data) const | FeatureGroupingAlgorithmKD | private |
| current_logger_ | ProgressLogger | mutableprotected |
| DefaultParamHandler(const String &name) | DefaultParamHandler | |
| DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| DefaultParamHandler() | DefaultParamHandler | private |
| defaults_ | DefaultParamHandler | protected |
| defaultsToParam_() | DefaultParamHandler | protected |
| endProgress(UInt64 bytes_processed=0) const | ProgressLogger | |
| error_name_ | DefaultParamHandler | protected |
| feature_distance_ | FeatureGroupingAlgorithmKD | private |
| FeatureGroupingAlgorithm() | FeatureGroupingAlgorithm | |
| FeatureGroupingAlgorithm(const FeatureGroupingAlgorithm &) | FeatureGroupingAlgorithm | private |
| FeatureGroupingAlgorithmKD() | FeatureGroupingAlgorithmKD | |
| FeatureGroupingAlgorithmKD(const FeatureGroupingAlgorithmKD &) | FeatureGroupingAlgorithmKD | private |
| getDefaults() const | DefaultParamHandler | |
| getLogType() const | ProgressLogger | |
| getName() const | DefaultParamHandler | |
| getParameters() const | DefaultParamHandler | |
| getSubsections() const | DefaultParamHandler | |
| group(const std::vector< FeatureMap > &maps, ConsensusMap &out) override | FeatureGroupingAlgorithmKD | virtual |
| group(const std::vector< ConsensusMap > &maps, ConsensusMap &out) override | FeatureGroupingAlgorithmKD | virtual |
| group_(const std::vector< MapType > &input_maps, ConsensusMap &out) | FeatureGroupingAlgorithmKD | private |
| GUI enum value | ProgressLogger | |
| last_invoke_ | ProgressLogger | mutableprotected |
| LogType enum name | ProgressLogger | |
| mz_ppm_ | FeatureGroupingAlgorithmKD | private |
| mz_tol_ | FeatureGroupingAlgorithmKD | private |
| nextProgress() const | ProgressLogger | |
| NONE enum value | ProgressLogger | |
| operator=(const FeatureGroupingAlgorithmKD &) | FeatureGroupingAlgorithmKD | private |
| OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | |
| OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger | |
| operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
| param_ | DefaultParamHandler | protected |
| postprocess_(const std::vector< MapType > &maps, ConsensusMap &out) | FeatureGroupingAlgorithm | inlineprotected |
| progress_ | FeatureGroupingAlgorithmKD | private |
| ProgressLogger() | ProgressLogger | |
| ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
| recursion_depth_ | ProgressLogger | protectedstatic |
| rt_tol_secs_ | FeatureGroupingAlgorithmKD | private |
| runClustering_(const KDTreeFeatureMaps &kd_data, ConsensusMap &out) | FeatureGroupingAlgorithmKD | private |
| setLogger(ProgressLoggerImpl *logger) | ProgressLogger | |
| setLogType(LogType type) const | ProgressLogger | |
| setName(const String &name) | DefaultParamHandler | |
| setParameters(const Param ¶m) | DefaultParamHandler | |
| setProgress(SignedSize value) const | ProgressLogger | |
| startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
| subsections_ | DefaultParamHandler | protected |
| transferSubelements(const std::vector< ConsensusMap > &maps, ConsensusMap &out) const | FeatureGroupingAlgorithm | |
| type_ | ProgressLogger | mutableprotected |
| updateClusterProxies_(std::set< ClusterProxyKD > &potential_clusters, std::vector< ClusterProxyKD > &cluster_for_idx, const std::set< Size > &update_these, const std::vector< Int > &assigned, const KDTreeFeatureMaps &kd_data) | FeatureGroupingAlgorithmKD | private |
| updateMembers_() | DefaultParamHandler | protectedvirtual |
| warn_empty_defaults_ | DefaultParamHandler | protected |
| writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="") | DefaultParamHandler | static |
| ~DefaultParamHandler() | DefaultParamHandler | virtual |
| ~FeatureGroupingAlgorithm() override | FeatureGroupingAlgorithm | |
| ~FeatureGroupingAlgorithmKD() override | FeatureGroupingAlgorithmKD | |
| ~ProgressLogger() | ProgressLogger | virtual |