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OpenMS
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This is the complete list of members for ACTrie, including all inherited members.
| ACTrie(uint32_t max_aaa=0, uint32_t max_mm=0) | ACTrie | |
| add_(const Index from, const AA edge) | ACTrie | private |
| addHits_(Index i, const size_t text_pos, std::vector< Hit > &hits) const | ACTrie | private |
| addHitsSpawn_(Index i, const ACSpawn &spawn, const size_t text_pos, std::vector< Hit > &hits, const int current_spawn_depths) const | ACTrie | private |
| addNeedle(const std::string &needle) | ACTrie | |
| addNeedles(const std::vector< std::string > &needles) | ACTrie | |
| addNeedlesAndCompress(const std::vector< std::string > &needles) | ACTrie | |
| compressTrie() | ACTrie | |
| createMMSpawns_(const Index i, const AA except_fromAA, const AA except_toAA, const AA except_edge, ACTrieState &state, const uint32_t aaa_left, const uint32_t mm_left) const | ACTrie | private |
| createMMSubSpawns_(const ACSpawn &prototype, const AA except_fromAA, const AA except_toAA, const AA except_edge, ACTrieState &state) const | ACTrie | private |
| createSpawns_(const Index i, const AA fromAA, const AA toAA, ACTrieState &state, const uint32_t aaa_left, const uint32_t mm_left) const | ACTrie | private |
| createSubSpawns_(const ACSpawn &prototype, const AA fromAA, const AA toAA, ACTrieState &state) const | ACTrie | private |
| findChildBFS_(const Index parent, const AA child_label) const | ACTrie | private |
| findChildNaive_(Index parent, AA child_label) | ACTrie | private |
| follow_(const Index i, const AA edge) const | ACTrie | private |
| followSpawn_(ACSpawn &spawn, const AA edge, ACTrieState &state) const | ACTrie | private |
| getAllHits(ACTrieState &state) const | ACTrie | |
| getMaxAAACount() const | ACTrie | |
| getMaxMMCount() const | ACTrie | |
| getNeedleCount() const | ACTrie | |
| max_aaa_ | ACTrie | private |
| max_mm_ | ACTrie | private |
| needle_count_ | ACTrie | private |
| nextHits(ACTrieState &state) const | ACTrie | |
| nextHitsNoClear_(ACTrieState &state) const | ACTrie | private |
| setMaxAAACount(const uint32_t max_aaa) | ACTrie | |
| setMaxMMCount(const uint32_t max_mm) | ACTrie | |
| stepMaster_(const Index i, const AA edge, ACTrieState &state) const | ACTrie | private |
| stepSpawn_(ACSpawn &spawn, ACTrieState &state) const | ACTrie | private |
| trie_ | ACTrie | private |
| umap_index2children_naive_ | ACTrie | private |
| umap_index2needles_ | ACTrie | private |
| ~ACTrie() | ACTrie |