AASequence Member List

This is the complete list of members for AASequence, including all inherited members.

AASequence()=default	AASequence
AASequence(const AASequence &)=default	AASequence
AASequence(AASequence &&)=default	AASequence
AASequence(const String &s)	AASequence	explicit
AASequence(const char *s)	AASequence	explicit
AASequence(const String &s, bool permissive)	AASequence	explicit
AASequence(const char *s, bool permissive)	AASequence	explicit
begin()	AASequence	inline
begin() const	AASequence	inline
c_term_mod_	AASequence	protected
empty() const	AASequence
end()	AASequence	inline
end() const	AASequence	inline
fromString(const String &s, bool permissive=true)	AASequence	static
fromString(const char *s, bool permissive=true)	AASequence	static
getAAFrequencies(std::map< String, Size > &frequency_table) const	AASequence
getAverageWeight(Residue::ResidueType type=Residue::Full, Int charge=0) const	AASequence
getCTerminalModification() const	AASequence
getCTerminalModificationName() const	AASequence
getFormula(Residue::ResidueType type=Residue::Full, Int charge=0) const	AASequence
getMonoWeight(Residue::ResidueType type=Residue::Full, Int charge=0) const	AASequence
getMZ(Int charge, Residue::ResidueType type=Residue::Full) const	AASequence
getNTerminalModification() const	AASequence
getNTerminalModificationName() const	AASequence
getPrefix(Size index) const	AASequence
getResidue(Size index) const	AASequence
getSubsequence(Size index, UInt number) const	AASequence
getSuffix(Size index) const	AASequence
has(const Residue &residue) const	AASequence
hasCTerminalModification() const	AASequence
hasNTerminalModification() const	AASequence
hasPrefix(const AASequence &peptide) const	AASequence
hasSubsequence(const AASequence &peptide) const	AASequence
hasSuffix(const AASequence &peptide) const	AASequence
isModified() const	AASequence
n_term_mod_	AASequence	protected
operator!=(const AASequence &rhs) const	AASequence
operator+(const AASequence &peptide) const	AASequence
operator+(const Residue *residue) const	AASequence
operator+=(const AASequence &)	AASequence
operator+=(const Residue *)	AASequence
operator<(const AASequence &rhs) const	AASequence
operator<<(std::ostream &os, const AASequence &peptide)	AASequence	friend
operator=(const AASequence &)=default	AASequence
operator=(AASequence &&)=default	AASequence
operator==(const AASequence &rhs) const	AASequence
operator>>(std::istream &is, const AASequence &peptide)	AASequence	friend
operator[](Size index) const	AASequence
parseModRoundBrackets_(const String::ConstIterator str_it, const String &str, AASequence &aas, const ResidueModification::TermSpecificity &specificity)	AASequence	protectedstatic
parseModSquareBrackets_(const String::ConstIterator str_it, const String &str, AASequence &aas, const ResidueModification::TermSpecificity &specificity)	AASequence	protectedstatic
parseString_(const String &peptide, AASequence &aas, bool permissive=true)	AASequence	protectedstatic
peptide_	AASequence	protected
setCTerminalModification(const String &modification)	AASequence
setCTerminalModification(const ResidueModification *modification)	AASequence
setCTerminalModification(const ResidueModification &mod)	AASequence
setCTerminalModificationByDiffMonoMass(double diffMonoMass, bool protein_term)	AASequence
setModification(Size index, const String &modification)	AASequence
setModification(Size index, const Residue *modification)	AASequence
setModification(Size index, const ResidueModification *modification)	AASequence
setModification(Size index, const ResidueModification &modification)	AASequence
setModificationByDiffMonoMass(Size index, double diffMonoMass)	AASequence
setNTerminalModification(const String &modification)	AASequence
setNTerminalModification(const ResidueModification *modification)	AASequence
setNTerminalModification(const ResidueModification &mod)	AASequence
setNTerminalModificationByDiffMonoMass(double diffMonoMass, bool protein_term)	AASequence
size() const	AASequence
toBracketString(bool integer_mass=true, bool mass_delta=false, const std::vector< String > &fixed_modifications=std::vector< String >()) const	AASequence
toString() const	AASequence
toUniModString() const	AASequence
toUnmodifiedString() const	AASequence
~AASequence()=default	AASequence