EnzymeXMLDataProvider.h

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// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Sachsenberg $
// $Authors: Sachsenberg $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/CHEMISTRY/DigestionEnzymeDataProvider.h>
#include <OpenMS/CHEMISTRY/DigestionEnzymeProtein.h>
#include <OpenMS/CHEMISTRY/DigestionEnzymeRNA.h>
#include <OpenMS/DATASTRUCTURES/StringUtils.h>
#include <OpenMS/config.h>
 
namespace OpenMS
{
  template <typename EnzymeType>
  class EnzymeXMLDataProvider : public DigestionEnzymeDataProvider<EnzymeType>
  {
  public:
    explicit EnzymeXMLDataProvider(const std::string& filename, bool optional = false);
 
    std::vector<std::unique_ptr<EnzymeType>> loadEnzymes() override;
 
  private:
    std::string filename_;
    bool optional_;
  };
 
  // Explicit instantiation declarations — definitions are in EnzymeXMLDataProvider.cpp
  extern template class OPENMS_DLLAPI EnzymeXMLDataProvider<DigestionEnzymeProtein>;
  extern template class OPENMS_DLLAPI EnzymeXMLDataProvider<DigestionEnzymeRNA>;
 
} // namespace OpenMS